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test fisher exact
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Please help with workspace error in R
R
test fisher exact
workspace
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
Sara
▴ 20
2
votes
10
replies
1.5k
views
How to get DE relative to a fold-change threshold in single factor experiments
edgeR
deanalysis
test fisher exact
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
thkapell
▴ 10
2
votes
2
replies
1.3k
views
Collapse FDR value of probes detecting the same gene
test fisher exact
EmpiricalBrownsMethod
affy
updated 8.7 years ago by
Gordon Smyth
51k • written 8.7 years ago by
tofukaj
• 0
3
votes
2
replies
2.4k
views
How to do simple Fisher' exact test for overlapped genomic interval in R?
test fisher exact
r
findoverlapsofpeaks
updated 19 months ago by
cherokee1456
• 0 • written 8.8 years ago by
Jurat Shahidin
▴ 80
0
votes
4
replies
1.8k
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fisher exact snp
test fisher exact
10.1 years ago
sleidymagaly
• 0
5 results • Page
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Comment: Differential Expression Analysis with unbalanced batches without replication bet
by
Thili
• 0
Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…
Comment: Problem at champ.load
by
andrew.gibbons
• 0
I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…
Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column
by
GV Yoshikawa
• 0
Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…
Answer: Differential Expression Analysis with unbalanced batches without replication bet
by
Gordon Smyth
51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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